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rbsD [2018-05-04 12:19:10]
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rbsD [2018-05-04 12:19:10]

ribose ABC transporter (membrane protein)
locus
BSU35930
pI
4.99
mw
14.09 kDa
protein length
131 aa Sequence Blast
gene length
393 bp Sequence Blast
function
ribose uptake
product
ribose ABC transporter (membrane protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.4|Utilization of ribose]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,703,271 → 3,703,666

    The protein

    Protein family

  • RbsD subfamily (according to Swiss-Prot)

    • Structure

  • [PDB|1OGD] (complex with D-ribose)

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]-[gene|C229BD2C00B169CF4A99482E65B3F749AD9D51D8|rbsK]-[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]-[gene|AB4A686F62550F90F5BD8D27DAADC9C33F1DA1DB|rbsA]-[gene|F1258E31151E137A850811B0C851D473CEFFD43B|rbsC]-[gene|1D67888E79B09956F9258F4068546D8C67103549|rbsB]
    description
    [Pubmed|7921236]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|7511775], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|7921236], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: activation, [Pubmed|7592460], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • expressed upon transition into the stationary phase ([protein|search|AbrB]) [Pubmed|7592460]
    • view in new tab

    Biological materials

    Mutant

  • BKE35930 (Δ[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE35930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GCTGTTCAGTATACCGTGTT, downstream forward: _UP4_CTTTTCTAGAAAGGAAGATG
  • BKK35930 (Δ[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK35930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GCTGTTCAGTATACCGTGTT, downstream forward: _UP4_CTTTTCTAGAAAGGAAGATG

    • References

  • 10092453,16872404,7592460,12738765,7921236,7511775